Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ornithine/dap/arginine decarboxylase decarboxylase 2 | ALO56_02097 | P27121 | Negative | 4724700 - 4725887 | 44269.1 |
| glycine betaine/choline opuc abc transporter, atp-binding protein | ALO56_04814 | Q8ZPK4 | Negative | 4726287 - 4727480 | 44409.6 |
| binding-protein dependent transport system inner membrane protein | ALO56_02099 | Q8ZPK3 | Negative | 4727438 - 4728091 | 22883.4 |
| substrate-binding region of abc-type glycine betaine transport system | ALO56_02100 | Q9HXC4 | Negative | 4728105 - 4728998 | 33170.7 |
| glycine/betaine abc transporter permease | ALO56_02101 | Q8ZPK1 | Negative | 4729013 - 4729726 | 24827.6 |
| peptide chain release factor 3 | ALO56_04815 | Q87WH1 | Positive | 4730032 - 4731654 | 61315.4 |
| atp-dependent rna helicase rhle | ALO56_04816 | P25888 | Negative | 4731796 - 4733148 | 49492.4 |
| dmt superfamily transporter inner membrane protein | ALO56_02104 | P0AA72 | Negative | 4733187 - 4734101 | 31902.9 |
| transcription regulator asnc | ALO56_100347 | Not Available | Positive | 4734267 - 4734773 | 18429.5 |
| dna polymerase iii subunit epsilon | ALO56_02105 | P54394 | Negative | 4734751 - 4735365 | 22409.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









