Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulators consisting of a chey-like receiver domain and a winged-helix dna-binding domain | ALO56_100168 | A0QBQ9 | Positive | 4669183 - 4669899 | 27011.9 |
| arac family transcriptional regulator | ALO56_01001 | Not Available | Negative | 4669886 - 4670923 | 39341.1 |
| diguanylate cye | ALO56_01002 | Not Available | Negative | 4670932 - 4671846 | 34461.0 |
| tonb-dependent receptor | ALO56_01003 | Not Available | Positive | 4672252 - 4674768 | 92526.5 |
| phytase domain-containing protein | ALO56_01004 | O31097 | Positive | 4674829 - 4676754 | 69273.5 |
| tolq protein | ALO56_01005 | Not Available | Positive | 4676842 - 4677540 | 25395.8 |
| tolr protein | ALO56_01006 | P50599 | Positive | 4677550 - 4677996 | 16062.5 |
| tonb protein | ALO56_01007 | Not Available | Positive | 4677993 - 4678832 | 30846.7 |
| methyl-accepting chemotaxis protein | ALO56_04555 | Not Available | Negative | 4679088 - 4681172 | 74745.2 |
| protein fecr | ALO56_01009 | Not Available | Negative | 4681230 - 4682354 | 41579.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









