Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor rpod | ALO56_01666 | P52326 | Positive | 3985350 - 3987200 | 69400.9 |
| sensory box/ggdef domain/eal domain-containing protein | ALO56_01667 | Not Available | Positive | 3987607 - 3990069 | 91145.3 |
| Trna-met | Not Available | Not Available | Positive | 3990124 - 3990200 | Not Available |
| site-specific recombinase, phage integrase family | ALO56_100656 | P10487 | Positive | 3990162 - 3991391 | 46405.7 |
| uncharacterized protein | ALO56_01668 | Not Available | Negative | 3992973 - 3993164 | 7014.3 |
| trah/virb6 protein | ALO56_01669 | Not Available | Negative | 3993458 - 3994543 | 38775.9 |
| lipoprotein | ALO56_101357 | Not Available | Negative | 3994540 - 3994794 | 9610.55 |
| hypothetical protein | ALO56_101382 | Not Available | Positive | 3995076 - 3995222 | 5663.44 |
| type iv secretion system protein | ALO56_01670 | Q2YJ75 | Negative | 3995278 - 3996042 | 28570.0 |
| uncharacterized protein | ALO56_01671 | Not Available | Positive | 3997066 - 3999708 | 98947.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









