Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminobutyrate--2-oxoglutarate aminotransferase | ALO56_04107 | P56744 | Negative | 3973852 - 3975234 | 49544.8 |
| outer membrane ferric siderophore receptor | ALO56_05176 | P11461 | Negative | 3975578 - 3978010 | 88015.7 |
| fecr protein | ALO56_04109 | P23485 | Negative | 3978052 - 3979020 | 35795.9 |
| ecf subfamily rna polymerase sigma-24 factor | ALO56_04110 | P23484 | Negative | 3979017 - 3979526 | 19677.3 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase | ALO56_01660 | Not Available | Negative | 3979958 - 3980485 | 19424.6 |
| dihydroneopterin aldolase | ALO56_01661 | P0AC17 | Negative | 3980476 - 3980829 | 12999.5 |
| glycerol-3-phosphate acyltransferase | ALO56_01662 | Q88A56 | Positive | 3980904 - 3981473 | 20286.5 |
| trna n6-adenosine threonylcarbamoyltransferase | ALO56_01663 | Q88A57 | Negative | 3981482 - 3982507 | 36565.1 |
| 30s ribosomal protein s21 | ALO56_01664 | Q48NU9 | Positive | 3982706 - 3982921 | 8386.25 |
| dna primase | ALO56_01665 | P0A118 | Positive | 3983327 - 3985282 | 72860.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









