Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyl-accepting chemotaxis protein | ALO56_04077 | G3XD24 | Positive | 3939153 - 3941096 | 69058.1 |
| major facilitator family transporter | ALO56_04078 | Not Available | Positive | 3941233 - 3942420 | 41285.7 |
| putative exported pectin lyase | ALO56_05171 | B0Y0L8 | Positive | 3942527 - 3943762 | 43615.4 |
| putative exported rhamnogalacturonase | ALO56_04080 | B0YEH9 | Positive | 3943793 - 3945394 | 56952.4 |
| uncharacterized protein | ALO56_04081 | Not Available | Negative | 3945427 - 3945705 | 10971.0 |
| uncharacterized protein | ALO56_04082 | Not Available | Negative | 3945788 - 3946963 | 43316.9 |
| ribosomal subunit interface protein | ALO56_04083 | Not Available | Negative | 3946973 - 3947398 | 15330.0 |
| glycerol kinase | ALO56_04084 | Q6D5T8 | Negative | 3947501 - 3948976 | 52476.5 |
| c-terminal region of transketolase | ALO56_04085 | A6VKQ3 | Negative | 3949036 - 3949992 | 33226.9 |
| putative n-terminal region of transketolase | ALO56_04086 | A6VKQ4 | Negative | 3949982 - 3950848 | 31372.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









