Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfate transporter/antisigma-factor antagonist stas | ALO56_03192 | Q9LW86 | Positive | 327339 - 328907 | 56408.1 |
| shikimate dehydrogenase | ALO56_03193 | A4XNB9 | Negative | 328938 - 329759 | 29270.8 |
| oxygen-dependent coproporphyrinogen-iii oxidase | ALO56_03194 | Q48QH6 | Negative | 330001 - 330915 | 34618.4 |
| quinone oxidoreductase | ALO56_03195 | P43903 | Positive | 331084 - 332061 | 34375.2 |
| threonylcarbamoyl-amp synthase | ALO56_03196 | Q500S6 | Negative | 332086 - 332643 | 20576.8 |
| dna processing protein dpra | ALO56_05000 | P30852 | Negative | 332681 - 333811 | 39478.5 |
| lysm domain-containing protein | ALO56_03198 | Not Available | Negative | 333917 - 334942 | 37570.9 |
| peptide deformylase | ALO56_03199 | Q88B43 | Positive | 335066 - 335572 | 19197.2 |
| methionyl-trna formyltransferase | ALO56_03200 | Q88B42 | Positive | 335635 - 336579 | 33481.7 |
| 16s rrna methyltransferase b | ALO56_100381 | Q88B41 | Positive | 336576 - 337886 | 47399.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









