Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-aminocyclopropane-1-carboxylate deaminase | ALO56_00753 | Q87YW7 | Positive | 3737226 - 3738242 | 36867.1 |
| sensor histidine kinase/response regulator | ALO56_00754 | Q881J7 | Positive | 3738483 - 3740657 | 79156.9 |
| lysr family transcriptional regulator | ALO56_00755 | P52662 | Negative | 3740670 - 3741524 | 30870.5 |
| uncharacterized protein | ALO56_00756 | Not Available | Positive | 3741593 - 3742540 | 33849.7 |
| protocatechuate 3,4-dioxygenase subunit alpha | ALO56_00585 | Not Available | Positive | 3742634 - 3743110 | 17676.7 |
| 4-hydroxybenzoate transporter | ALO56_00586 | Q9I6Q3 | Positive | 3743172 - 3744527 | 47524.3 |
| 3-carboxy-cis,cis-muconate cycloisomerase | ALO56_00587 | Q9I6Q8 | Positive | 3744553 - 3745914 | 49161.1 |
| 4-carboxymuconolactone decarboxylase | ALO56_00588 | Not Available | Positive | 3745911 - 3746309 | 15106.2 |
| outer membrane porin, oprd family protein | ALO56_04462 | Not Available | Negative | 3746376 - 3747632 | 46020.7 |
| uncharacterized protein | ALO56_00590 | Not Available | Positive | 3747855 - 3748742 | 31921.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









