Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein | ALO56_01944 | Not Available | Negative | 3492203 - 3492499 | 11149.3 |
| uncharacterized protein | ALO56_01945 | P42597 | Negative | 3492523 - 3493044 | 19992.1 |
| response regulator/sensory box/ggdef domain/eal domain protein | ALO56_01946 | Not Available | Negative | 3493086 - 3495215 | 78722.6 |
| lyase | ALO56_01947 | Not Available | Positive | 3495533 - 3496204 | 25285.6 |
| sodium/proline symporter | ALO56_04778 | P07117 | Negative | 3496288 - 3497775 | 52786.2 |
| trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase | ALO56_01948 | O52485 | Positive | 3498224 - 3502177 | 142887.0 |
| lysr family transcriptional regulator | ALO56_01949 | P37641 | Negative | 3502226 - 3503134 | 33323.3 |
| acyl-coa dehydrogenase | ALO56_01950 | Not Available | Positive | 3504275 - 3506077 | 66221.0 |
| uncharacterized protein | ALO56_01951 | Not Available | Negative | 3506112 - 3508760 | 97847.8 |
| k antiporter nhap2 | ALO56_01952 | Q87VB6 | Positive | 3508959 - 3510701 | 61381.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









