Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i secretion system atpase, prtd | ALO56_02422 | Q03024 | Positive | 282085 - 283920 | 65950.7 |
| type i secretion membrane fusion protein, hlyd | ALO56_02423 | Q03025 | Positive | 283917 - 285254 | 48951.4 |
| abc transporter permease | ALO56_02424 | Q03027 | Positive | 285256 - 286605 | 50350.1 |
| sarcosine oxidase | ALO56_04872 | Not Available | Negative | 286613 - 287794 | 42621.7 |
| hrps protein | ALO56_02426 | P36219 | Positive | 288783 - 289721 | 35259.0 |
| uncharacterized protein | ALO56_02427 | Not Available | Positive | 289837 - 290043 | 6870.03 |
| hrpz family protein | ALO56_02428 | Not Available | Positive | 290113 - 291063 | 32702.6 |
| hrpb protein | ALO56_02429 | Not Available | Positive | 291098 - 291457 | 12963.2 |
| hrcj | ALO56_02430 | Q01251 | Positive | 291467 - 292258 | 28917.4 |
| hrpf | ALO56_02431 | Not Available | Positive | 293487 - 293708 | 8202.46 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









