Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| branched-chain amino acid abc transporter substrate-binding protein | ALO56_02610 | Not Available | Positive | 3271127 - 3272308 | 42589.3 |
| inner-membrane translocator | ALO56_02611 | P0A2J2 | Positive | 3272375 - 3273277 | 32907.3 |
| branched-chain amino acid abc transporter permease | ALO56_02612 | Not Available | Positive | 3273279 - 3274418 | 41226.5 |
| abc transporter | ALO56_02613 | P0A9S8 | Positive | 3274418 - 3275155 | 27065.0 |
| branched-chain amino acid abc transporter atp-binding protein | ALO56_02614 | P21630 | Positive | 3275158 - 3275847 | 25245.0 |
| urease accessory protein uree | ALO56_02615 | Q4ZUC9 | Positive | 3275869 - 3276309 | 16314.5 |
| urease accessory protein uref | ALO56_02616 | Q883F2 | Positive | 3276306 - 3277049 | 26922.4 |
| urease subunit gamma/beta | ALO56_02617 | Q883F3 | Positive | 3277074 - 3277769 | 25003.1 |
| urease subunit alpha | ALO56_02618 | Q4ZUD2 | Positive | 3277773 - 3279485 | 61149.4 |
| urease accessory protein ureg | ALO56_02619 | A5EJY3 | Positive | 3279510 - 3280169 | 23677.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









