Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| high frequency lysogenization protein hfld -like protein | ALO56_02398 | Q4ZRJ9 | Negative | 250191 - 250811 | 22958.0 |
| pp_00223 | ALO56_02399 | Not Available | Negative | 250811 - 251911 | Not Available |
| nudix hydrolase | ALO56_02400 | A7ZKS4 | Negative | 252002 - 252448 | 16869.9 |
| isocitrate dehydrogenase | ALO56_04868 | P16100 | Negative | 252583 - 254841 | 82007.7 |
| isocitrate dehydrogenase | ALO56_02402 | Not Available | Positive | 255277 - 255564 | 10399.3 |
| hypothetical protein | ALO56_02403 | Q02NB5 | Positive | 255641 - 255874 | 8022.53 |
| cold-shock dna-binding protein family protein | ALO56_02404 | Q9KSW4 | Negative | 255957 - 256226 | 9383.1 |
| atp-dependent clp protease adapter protein clps | ALO56_02405 | Q87ZS0 | Positive | 256449 - 256811 | 13545.2 |
| atp-dependent clp protease atp-binding subunit clpa | ALO56_02406 | P0ABI1 | Positive | 256842 - 259115 | 83503.8 |
| translation initiation factor if-1 | ALO56_02407 | Q48H67 | Negative | 259229 - 259447 | 8303.06 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









