Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein | ALO56_01318 | Not Available | Positive | 2977145 - 2977828 | 24777.3 |
| uncharacterized protein | ALO56_01319 | Not Available | Negative | 2977844 - 2979607 | 64091.7 |
| inosine-uridine preferring nucleoside hydrolase | ALO56_01320 | Q8RY23 | Negative | 2979731 - 2980735 | 35823.7 |
| diguanylate cye | ALO56_01321 | Q9ABX9 | Positive | 2981082 - 2983025 | 71371.8 |
| transcriptional regulator vanr | ALO56_01322 | Not Available | Positive | 2983113 - 2983823 | 26011.4 |
| vanillate monooxygenase, oxidoreductase subunit | ALO56_04613 | O54037 | Negative | 2983824 - 2985464 | 60474.5 |
| iron abc transporter periplasmic iron-binding protein | ALO56_00177 | Q9HTX3 | Positive | 2986319 - 2987320 | 36520.5 |
| iron abc transporter permease | ALO56_00178 | P71338 | Positive | 2987475 - 2989091 | 58565.5 |
| aminomethyltransferase | ALO56_00179 | Q88AS0 | Positive | 2989246 - 2990328 | 39629.7 |
| glycine cleavage system h protein | ALO56_00180 | Q88AR9 | Positive | 2990376 - 2990762 | 13373.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









