Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal peptide protein | ALO56_01304 | Not Available | Positive | 2957083 - 2958030 | 34182.9 |
| transcriptional regulator, marr family | ALO56_100004 | Not Available | Negative | 2958096 - 2958584 | 17813.8 |
| p-hydroxycinnamoyl coa hydratase/lyase | ALO56_01305 | O69762 | Positive | 2958793 - 2959623 | 31133.5 |
| vanillin dehydrogenase | ALO56_01306 | O69763 | Positive | 2959724 - 2961172 | 50600.8 |
| feruloyl-coa synthase | ALO56_04609 | E5XP76 | Positive | 2961258 - 2963210 | 71192.5 |
| 3-ketoacyl-coa thiolase | ALO56_100156 | Q3T0R7 | Positive | 2963135 - 2964442 | 45911.3 |
| uncharacterized protein | ALO56_01308 | Not Available | Positive | 2964591 - 2964947 | 13965.5 |
| uncharacterized protein | ALO56_01309 | Not Available | Negative | 2964968 - 2965375 | 15134.9 |
| unknown protein sequence | ALO56_05247 | Not Available | Negative | 2965413 - 2966414 | 36986.5 |
| lysr family transcriptional regulator | ALO56_01310 | Not Available | Negative | 2966432 - 2967349 | 34437.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









