Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sarcosine oxidase subunit beta | ALO56_02804 | P40875 | Positive | 2687234 - 2688475 | 45247.5 |
| sarcosine oxidase subunit delta | ALO56_02805 | Not Available | Positive | 2688501 - 2688806 | 11751.8 |
| sarcosine oxidase, alpha subunit | ALO56_02806 | O87386 | Positive | 2688803 - 2689843 | 37118.8 |
| sarcosine oxidase, alpha subunit | ALO56_02807 | Q46337 | Positive | 2689968 - 2691656 | 61759.0 |
| sarcosine oxidase, gamma subunit | ALO56_02808 | Not Available | Positive | 2691660 - 2692232 | 20520.3 |
| iclr family transcriptional regulator | ALO56_02809 | P77300 | Positive | 2692322 - 2693095 | 28577.1 |
| methyl-accepting chemotaxis protein | ALO56_02810 | Not Available | Positive | 2693270 - 2695210 | 69919.8 |
| lysr family transcriptional regulator | ALO56_04928 | Not Available | Negative | 2695756 - 2696805 | 38477.7 |
| metallo-beta-lactamase | ALO56_02812 | Not Available | Positive | 2696766 - 2697641 | 31543.1 |
| putative transport protein, azld family | ALO56_02813 | Not Available | Negative | 2697705 - 2698022 | 11835.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









