Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formyltetrahydrofolate deformylase | ALO56_100069 | Q46339 | Negative | 203080 - 203937 | 31999.2 |
| sarcosine oxidase, gamma subunit | ALO56_01336 | Not Available | Negative | 204009 - 204641 | 23027.8 |
| sarcosine oxidase subunit alpha | ALO56_04614 | Not Available | Negative | 204732 - 207752 | 109523.0 |
| sarcosine oxidase, delta subunit, heterotetrameric | ALO56_01338 | Q46336 | Negative | 207749 - 208045 | 11347.3 |
| sarcosine oxidase, beta subunit | ALO56_01339 | Not Available | Negative | 208060 - 209310 | 45312.2 |
| serine hydroxymethyltransferase | ALO56_01340 | Q48CP3 | Negative | 209328 - 210581 | 44865.4 |
| adenosylhomocysteinase | ALO56_00919 | Q48PB5 | Negative | 210907 - 212316 | 51392.8 |
| 4-hydroxybenzoyl-coa thioesterase | ALO56_00920 | Not Available | Positive | 212722 - 213123 | 15101.2 |
| hydroxypyruvate isomerase | ALO56_04536 | Q0KBD1 | Negative | 213491 - 214291 | 29731.3 |
| gluconate transporter | ALO56_00922 | Q46892 | Negative | 214296 - 215753 | 50403.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









