Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | ALO56_03901 | Q9X2T1 | Negative | 1919370 - 1919699 | 11776.2 |
| gntr family transcriptional regulator | ALO56_03902 | Not Available | Negative | 1919822 - 1920529 | 25539.6 |
| amino acid abc transporter substrate-binding protein | ALO56_03903 | Not Available | Positive | 1920778 - 1921563 | 27887.8 |
| amino acid abc transporter permease | ALO56_03904 | Not Available | Positive | 1921588 - 1922259 | 24913.1 |
| amino acid abc transporter permease | ALO56_03905 | P0AFT3 | Positive | 1922259 - 1922906 | 23401.2 |
| abc transporter-like protein | ALO56_03906 | P48243 | Positive | 1922893 - 1923627 | 26801.7 |
| uncharacterized protein | ALO56_05266 | Not Available | Negative | 1924979 - 1926016 | 37110.7 |
| polyphosphate kinase | ALO56_03907 | Q87UP6 | Negative | 1926441 - 1928651 | 82710.1 |
| delta-aminolevulinic acid dehydratase | ALO56_03908 | Q59643 | Negative | 1928668 - 1929678 | 36861.1 |
| deda family protein | ALO56_03909 | P33366 | Positive | 1929909 - 1930568 | 24565.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









