Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhs element vgr protein | ALO56_00616 | Q9HYC3 | Positive | 1694697 - 1696184 | 56347.6 |
| cytochrome c oxidase subunit 2 | ALO56_04139 | Q1RI44 | Negative | 1698855 - 1699994 | 42485.1 |
| hypothetical protein | ALO56_100015 | Not Available | Positive | 1700307 - 1700981 | 24837.4 |
| putative sulfate transporter, msf superfamily | ALO56_100780 | O06984 | Negative | 1701091 - 1702728 | 57259.5 |
| carbonic anhydrase | ALO56_100209 | Q9I262 | Negative | 1702725 - 1703504 | 28347.6 |
| radical sam domain-containing protein | ALO56_04140 | P9WL78 | Negative | 1703672 - 1704790 | 41379.3 |
| uncharacterized protein | ALO56_04141 | Not Available | Positive | 1704969 - 1705439 | 17472.8 |
| uncharacterized protein | ALO56_04142 | Not Available | Positive | 1705439 - 1705969 | 19604.6 |
| uncharacterized protein | ALO56_04143 | Not Available | Positive | 1706153 - 1706389 | 9027.72 |
| uncharacterized protein | ALO56_04144 | Not Available | Positive | 1706447 - 1706734 | 10591.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









