Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhs element vgr protein | ALO56_04475 | Not Available | Negative | 1616130 - 1618169 | 76404.9 |
| serine-threonine kinase stk1 | ALO56_00622 | Q8NU98 | Negative | 1618188 - 1619195 | 37505.2 |
| serine/threonine phosphoprotein phosphatase stp1 | ALO56_00623 | O34779 | Negative | 1619192 - 1619920 | 26235.3 |
| type vi secretion protein icmf | ALO56_00624 | Not Available | Negative | 1619920 - 1623450 | 133580.0 |
| putative outer membrane protein | ALO56_00625 | Not Available | Negative | 1623461 - 1624336 | 33093.8 |
| uncharacterized protein | ALO56_00626 | Not Available | Negative | 1624342 - 1625673 | 49640.5 |
| lipoprotein | ALO56_00627 | Not Available | Negative | 1625676 - 1626176 | 18427.9 |
| fha domain-containing protein | ALO56_00628 | Not Available | Negative | 1626182 - 1627378 | 44415.3 |
| hypothetical protein | ALO56_00629 | Not Available | Negative | 1627396 - 1627536 | 5036.09 |
| sigma-54 dependent transcriptional regulator | ALO56_04479 | Not Available | Negative | 1627624 - 1629159 | 56245.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









