Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative pillin | ALO56_101165 | Not Available | Positive | 1415134 - 1415616 | 16750.3 |
| type iv pilus assembly protein pilw | ALO56_00938 | Not Available | Positive | 1416131 - 1416835 | 25244.5 |
| type iv pilus assembly protein pilx | ALO56_00939 | Not Available | Positive | 1416846 - 1417352 | 17367.2 |
| type iv pilus-associated protein | ALO56_00940 | Q9HVM8 | Positive | 1417339 - 1420599 | 115115.0 |
| type iv pilus bioproteinsis protein | ALO56_00941 | Not Available | Positive | 1420611 - 1421012 | 14283.0 |
| glycine oxidase thio | ALO56_00942 | Q88Q83 | Positive | 1421040 - 1422152 | 40017.4 |
| helix-turn-helix, fis-type | ALO56_00943 | Q00934 | Negative | 1422316 - 1423656 | 49932.1 |
| type iv pilus-associated protein | ALO56_00944 | P33639 | Negative | 1423659 - 1425251 | 58382.1 |
| uncharacterized protein | ALO56_04537 | Not Available | Negative | 1425241 - 1425573 | 12455.4 |
| outer membrane protein assembly factor bamd | ALO56_04538 | P33641 | Negative | 1425604 - 1426710 | 41518.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









