Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | strain ICMP2848 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1207440 bp
Thymine Count
1189932 bp
Guanine Count
1743648 bp
Cytosine Count
1759805 bp
Genome Length
5902031 bp
Protein-coding Genes
4909 genes
Non-Coding Genes
102 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| catalytic ligb subunit of aromatic ring-opening dioxygenase | ALO56_03412 | Q949R4 | Negative | 1338227 - 1338994 | 27825.2 |
| thiopurine s-methyltransferase | ALO56_03413 | Q885Q4 | Positive | 1339096 - 1339767 | 25359.2 |
| protease htpx | ALO56_03414 | Q885Q3 | Negative | 1339889 - 1340776 | 32385.8 |
| aminotransferase alat | ALO56_100272 | P0A960 | Negative | 1341043 - 1342383 | 49488.7 |
| peptide methionine sulfoxide reductase msrb | ALO56_03415 | Q4K8U5 | Positive | 1342446 - 1342841 | 14747.5 |
| glutathione peroxidase | ALO56_05037 | Q9CFV1 | Positive | 1342970 - 1343455 | 17791.6 |
| response regulator receiver:atp-binding region | ALO56_05038 | Not Available | Negative | 1343452 - 1345881 | 89548.0 |
| uncharacterized protein | ALO56_03417 | Not Available | Positive | 1345905 - 1346795 | 33759.1 |
| gaf domain-containing protein | ALO56_101308 | P76270 | Positive | 1346735 - 1347274 | 19073.8 |
| uncharacterized protein | ALO56_03418 | Not Available | Negative | 1347526 - 1348296 | 28751.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |









