Pseudomonas amygdali pv. ulmi strain ICMP3962

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas amygdali pv. ulmi strain ICMP3962 is a Gram-negative bacterium characterized by its rod shape and mobility. This strain possesses a single replicon, which is significant for its genetic stability and replication mechanism. This pathogen is known to infect various hosts, including Olea europaea (olive), Mallotus japonicus, Loropetalum chinense, and Prunus dulcis (almond). The primary health effect associated with this bacterium is the manifestation of leaf spot, a condition that can lead to reduced aesthetic value and diminished health of the affected plants. The presence of Pseudomonas amygdali pv. ulmi in these host species highlights its ecological role as a plant pathogen that can impact agricultural practices and biodiversity within its environment. Understanding the interactions and effects of this strain on its hosts can provide insights into disease management and the ecological balance within plant communities, particularly in regions where these host plants are cultivated. Overall, the characteristics of Pseudomonas amygdali pv. ulmi strain ICMP3962 illustrate its potential impact on plant health and the importance of monitoring such pathogens in agricultural settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas amygdali
Strainpv. ulmi strain ICMP3962

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas amygdali pv. ulmi strain ICMP3962
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Olea europaea, Mallotus japonicus, Loropetalum chinense
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas amygdali pv. ulmi strain ICMP3962

Gene Summary

Adenine Count

1316248 bp

Thymine Count

1306428 bp

Guanine Count

1803600 bp

Cytosine Count

1813726 bp

Genome Length

6244155 bp

Protein-coding Genes

5614 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid abc transporter atp-binding proteinALO41_00115Not AvailableNegative5584457 - 558493917263.8
aspartate/glutamate abc-type transport system, permease proteinALO41_00116P0AER7Negative5584936 - 558560124200.6
amino acid abc transporter permeaseALO41_00117P0AER4Negative5585601 - 558634727660.3
amino acid abc transporter, periplasmic amino acid-binding proteinALO41_04588Q9I402Negative5586478 - 558774346167.8
glycerol-3-phosphate dehydrogenaseALO41_04589O83004Negative5587740 - 558936260322.4
glycerol-3-phosphate regulon repressorALO41_04590Q51391Negative5589713 - 559046827768.5
glycerol kinaseALO41_00121Q48F01Negative5590568 - 559212157645.4
glycerol uptake facilitator proteinALO41_00122Q51389Negative5592134 - 559299129906.0
cys-trna deacylaseALO41_00123P0AAR3Positive5593332 - 559380216692.2
abc transporter atp-binding proteinALO41_04591Q88ZJ6Negative5593811 - 559488439104.8

Displaying genes 5191 – 5200 of 5733 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

320 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 320 metabolites

Health Effects

Health ConditionRelationReference
Leaf spotCausesPMC9343901

Displaying health effects 1 – 1 of 1 in total