Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas amygdali |
| Strain | pv. ulmi strain ICMP3962 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Olea europaea, Mallotus japonicus, Loropetalum chinense |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1316248 bp
Thymine Count
1306428 bp
Guanine Count
1803600 bp
Cytosine Count
1813726 bp
Genome Length
6244155 bp
Protein-coding Genes
5614 genes
Non-Coding Genes
119 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system pilin protein | ALO41_03419 | Q52480 | Negative | 3500225 - 3500551 | 11163.0 |
| type iii secretion system transcriptional regulator | ALO41_03420 | P26316 | Negative | 3500643 - 3501551 | 33270.3 |
| type iii transcriptional regulator hrpr | ALO41_03421 | P37930 | Negative | 3501602 - 3502522 | 34315.8 |
| membrane-bound lytic murein transglycosylase d | ALO41_101765 | P0AEZ8 | Negative | 3503604 - 3505076 | 53835.4 |
| type iii effector | ALO41_03422 | Not Available | Positive | 3505241 - 3510442 | 188457.0 |
| effector protein hopm1 | ALO41_03423 | Not Available | Negative | 3510681 - 3512966 | 81116.8 |
| effector protein hopm1 | ALO41_101816 | Q887D0 | Negative | 3512993 - 3513178 | 6475.81 |
| dihydrodipicolinate synthase/n-acetylneuraminate lyase | ALO41_03424 | Not Available | Negative | 3513175 - 3513669 | 18162.5 |
| type iii helper protein hrpw1 | ALO41_03425 | D3JTC1 | Positive | 3513973 - 3515226 | 43245.1 |
| type iii effector hopaa1-1 | ALO41_05404 | Not Available | Negative | 3515313 - 3516713 | 48921.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.








