Pseudomonas amygdali pv. ulmi strain ICMP3962

RodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas amygdali pv. ulmi strain ICMP3962 is a Gram-negative bacterium characterized by its rod shape and mobility. This strain possesses a single replicon, which is significant for its genetic stability and replication mechanism. This pathogen is known to infect various hosts, including Olea europaea (olive), Mallotus japonicus, Loropetalum chinense, and Prunus dulcis (almond). The primary health effect associated with this bacterium is the manifestation of leaf spot, a condition that can lead to reduced aesthetic value and diminished health of the affected plants. The presence of Pseudomonas amygdali pv. ulmi in these host species highlights its ecological role as a plant pathogen that can impact agricultural practices and biodiversity within its environment. Understanding the interactions and effects of this strain on its hosts can provide insights into disease management and the ecological balance within plant communities, particularly in regions where these host plants are cultivated. Overall, the characteristics of Pseudomonas amygdali pv. ulmi strain ICMP3962 illustrate its potential impact on plant health and the importance of monitoring such pathogens in agricultural settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas amygdali
Strainpv. ulmi strain ICMP3962

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas amygdali pv. ulmi strain ICMP3962
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Olea europaea, Mallotus japonicus, Loropetalum chinense
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas amygdali pv. ulmi strain ICMP3962

Gene Summary

Adenine Count

1316248 bp

Thymine Count

1306428 bp

Guanine Count

1803600 bp

Cytosine Count

1813726 bp

Genome Length

6244155 bp

Protein-coding Genes

5614 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinALO41_03606Q9I745Positive1925174 - 192565618043.8
type vi secretion atpaseALO41_05429Q9I742Positive1930178 - 193088526068.5
tn3 family transposaseALO41_05506P13694Negative1930886 - 19310526218.63
hypothetical proteinALO41_102659Not AvailablePositive1931099 - 19312365055.24
rlgaALO41_100644P55559Positive1931306 - 193191122462.0
integraseALO41_03897Not AvailablePositive1931895 - 193355363344.8
exea-like proteinALO41_03898Not AvailablePositive1933543 - 193451436382.2
unknown protein sequenceALO41_03577Not AvailablePositive1936413 - 19365835951.46
uncharacterized proteinALO41_03578P43999Negative1936631 - 193717620761.2
uncharacterized proteinALO41_03579Not AvailablePositive1937296 - 193829436452.3

Displaying genes 1851 – 1860 of 5733 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

320 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 320 metabolites

Health Effects

Health ConditionRelationReference
Leaf spotCausesPMC9343901

Displaying health effects 1 – 1 of 1 in total