Pseudomonas tremae strain ICMP9151

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas tremae strain ICMP9151 is characterized by having a single replicon, which indicates a streamlined genomic organization. The complete genome of this strain is accessible under the accession number LJRO00000000.1. Pseudomonas species are known for their versatility and adaptability in various environments, often playing significant roles in ecological processes. The presence of a single replicon in Pseudomonas tremae strain ICMP9151 may suggest a focused genomic architecture that could enhance its ability to adapt to specific ecological niches or environmental conditions. This trait might influence its metabolic capabilities and interactions with other microorganisms or plants in its habitat. Understanding the genomic structure of Pseudomonas tremae strain ICMP9151 can provide insights into its ecological role and potential applications in bioremediation or agriculture. The streamlined genome could imply efficient nutrient utilization, making this strain a candidate for further studies in microbial ecology and its applications in sustainable practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas tremae
Strainstrain ICMP9151

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas tremae strain ICMP9151
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas tremae strain ICMP9151 PtrICMP9151_Contig_406, whole

Gene Summary

Adenine Count

1243075 bp

Thymine Count

1259160 bp

Guanine Count

1727034 bp

Cytosine Count

1699647 bp

Genome Length

5929145 bp

Protein-coding Genes

5403 genes

Non-Coding Genes

145 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidine kinase, hamp region: chemotaxis sensory transducerALO43_00901Q88NI1Positive5008096 - 500989265953.7
uncharacterized proteinALO43_00902O34593Negative5009957 - 501032813996.7
uncharacterized proteinALO43_00903Not AvailablePositive5010455 - 501074210453.5
endoribonuclease l-psp family proteinALO43_00904P39332Negative5010855 - 501125314735.9
dna topoisomeraseALO43_00905Q9KQF5Negative5011342 - 501331571865.8
uncharacterized proteinALO43_00906Not AvailableNegative5013497 - 501432129146.1
histidine kinase, hamp region:cache: chemotaxis sensory transducerALO43_00907Q882Z2Positive5014630 - 501654668759.1
phosphonates import atp-binding protein phncALO43_00908Q48HL2Positive5016814 - 501764730154.6
phosphonates abc transporter periplasmic phosphonates-binding proteinALO43_00909P16682Positive5017701 - 501871136919.9
phosphonate abc transporter, permease proteinALO43_00910A0A140NFA3Positive5018738 - 501952628801.7

Displaying genes 4781 – 4790 of 5548 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

316 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 316 metabolites

Health Effects

No health effects information available for this bacterium.