Pseudomonas syringae pv. syringae strain ICMP3023

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. syringae strain ICMP3023 is a Gram-negative, aerobic heterotrophic bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This strain is mesophilic, thriving within a moderate temperature range conducive to its growth. It exhibits a free-living lifestyle and is known to inhabit multiple environments, indicating its ecological versatility. The bacterium possesses a single replicon and is surrounded by two membranes, a characteristic of its cellular structure. It interacts with a wide array of hosts, including various plant species such as Solanum lycopersicum (tomato), Oryza sativa (rice), and Arabidopsis thaliana, as well as fungi and animals (Homo sapiens and Metazoa). Pseudomonas syringae pv. syringae strain ICMP3023 is associated with several plant diseases, leading to significant agricultural impacts. It can cause symptoms such as blight, chlorosis, necrosis, and bacterial canker, resulting in foliar necroses and cankers that affect plant health and yield. The diverse range of hosts and the pathogenicity of this strain underscore its ecological importance and potential as a plant pathogen. Understanding its traits and interactions with various organisms can be pivotal for developing strategies to manage the diseases it causes, thereby benefiting agricultural practices and plant health management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. syringae strain ICMP3023

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. syringae strain ICMP3023
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa, Viridiplantae
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityPlant

Genome Summary

Pseudomonas syringae pv. syringae strain ICMP3023

Gene Summary

Adenine Count

1253511 bp

Thymine Count

1238503 bp

Guanine Count

1783486 bp

Cytosine Count

1797443 bp

Genome Length

6073080 bp

Protein-coding Genes

5172 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
marr family transcriptional regulatorALO45_00117Not AvailableNegative5549488 - 554994016129.4
alginate lyaseALO45_04305Not AvailablePositive5550400 - 555114627757.5
heavy metal two component sensor histidine kinaseALO45_00119Q44007Negative5551166 - 555255451313.1
dna-binding heavy metal response regulatorALO45_101959Not AvailableNegative5552533 - 555331529937.7
uncharacterized proteinALO45_00120Not AvailablePositive5553393 - 555399820899.9
uncharacterized proteinALO45_00121G8QM62Positive5554073 - 555469323181.2
sulfite oxidase, molibdopterin-binding subunitALO45_100678G8QM63Positive5554690 - 555546029299.0
tripartite ferrous iron transport system, periplasmic protein efeoALO45_00122Q66BP5Negative5555643 - 555646730238.8
tripartite ferrous iron transport system, periplasmic protein efebALO45_00123Q8XAS4Negative5556497 - 555781947645.2
ferrous iron transport periplasmic protein efeoALO45_100284Q1C8M2Negative5557839 - 555905043005.1

Displaying genes 4921 – 4930 of 5291 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

322 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 322 metabolites

Health Effects

Health ConditionRelationReference
ChlorosisCausesPMC3202874
NecrosisCausesPMC3202874
Foliar necroses and cankersCausesPMC6638699
Bacterial cankerCausesPMC8815115
BlightCausesPMC12030312
Plant diseasesCausesPMC3029378
Bacterial cankerCausesPMC4803819
Cherry cankerCausesPMC9305585

Displaying health effects 1 – 8 of 8 in total