Pseudomonas syringae pv. syringae strain ICMP3023

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. syringae strain ICMP3023 is a Gram-negative, rod-shaped bacterium that primarily exists as single cells and exhibits aerobic metabolism, relying on organic compounds as a heterotrophic energy source. This strain is part of the diverse Pseudomonas genus, known for its versatility in utilizing various environmental habitats, which may include soil, water, and plant surfaces. As an aerobic organism, P. syringae pv. syringae strain ICMP3023 requires oxygen for growth and metabolism, positioning it within a specific ecological niche where oxygen is readily available. Its ability to thrive in multiple habitats highlights the adaptability of this strain, which can potentially play roles in nutrient cycling and interactions with other microorganisms in its environment. The presence of this bacterium in various habitats suggests that it may contribute to the biological dynamics of these ecosystems, possibly influencing plant health and microbial community structures. Further research into its environmental interactions could provide insights into its ecological roles, particularly in relation to its heterotrophic lifestyle in diverse settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. syringae strain ICMP3023

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. syringae strain ICMP3023
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityPlant

Genome Summary

Pseudomonas syringae pv. syringae strain ICMP3023


Gene Summary

Adenine Count

1253511 bp

Thymine Count

1238503 bp

Guanine Count

1783486 bp

Cytosine Count

1797443 bp

Genome Length

6073080 bp

Protein-coding Genes

5172 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinALO45_05433Not Available+4740889 - 474170129724.2
Tail sheath proteinALO45_03882P44233+4741905 - 474340153297.1
Tail tube proteinALO45_03883Not Available+4743462 - 474380912454.8
Putative tail proteinALO45_03884Not Available+4744233 - 474639275187.0
Tail proteinALO45_03885Not Available+4747817 - 474894441204.7
Putative base plate assembly proteinALO45_03886Not Available+4748941 - 474945317981.6
Putative tail proteinALO45_03887P44239+4749450 - 474984815337.1
Tail proteinALO45_101052P75981+4749838 - 475087837011.8
Putative phage-related tail fiber proteinALO45_03888Not Available+4751476 - 475293651761.9
Tail fiber assembly proteinALO45_03889Not Available+4752944 - 475351021018.7

Displaying genes 1 – 10 of 5291 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

322 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 322 metabolites