Pseudomonas savastanoi pv. nerii strain ICMP16943

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas savastanoi pv. nerii strain ICMP16943 is a gram-negative, rod-shaped bacterium characterized as a heterotrophic aerobe. It is capable of motility, facilitated by the presence of flagella, and typically exists as single cells. This strain thrives optimally at a temperature of 28°C and is classified as mesophilic, indicating a preference for moderate temperature ranges. This bacterium is free-living and has a unique ecological niche, as it is known to inhabit multiple environments. Its biotic relationships include associations with various host plants, such as Actinidia deliciosa (kiwifruit), Actinidia chinensis (Chinese gooseberry), Olea europaea (olive), Punica granatum (pomegranate), and Fraxinus excelsior (ash). Notably, Pseudomonas savastanoi pv. nerii strain ICMP16943 is associated with several plant diseases, including olive knot disease, bacterial canker, and bacterial canker disease affecting kiwifruit. The dual-membrane structure and the presence of a single replicon further define its cellular organization. Given its pathogenic interactions with economically important crops, the ecological impact of this bacterium is significant, especially concerning agricultural health and crop yield. Understanding the traits and behaviors of Pseudomonas savastanoi pv. nerii strain ICMP16943 can aid in managing the diseases it causes, highlighting the importance of monitoring and controlling its spread in horticultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas savastanoi
Strainpv. nerii strain ICMP16943

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas savastanoi pv. nerii strain ICMP16943
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Actinidia deliciosa, Actinidia chinensis, Olea europaea
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas savastanoi pv. nerii strain ICMP16943

Gene Summary

Adenine Count

1198453 bp

Thymine Count

1186920 bp

Guanine Count

1658560 bp

Cytosine Count

1671104 bp

Genome Length

5715458 bp

Protein-coding Genes

5241 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l6ALO61_03128Q4ZMQ9Positive4219170 - 421970319212.3
50s ribosomal protein l18ALO61_03129Q48D52Positive4219714 - 422006412604.3
30s ribosomal protein s5ALO61_03130Q889V4Positive4220068 - 422056817733.6
protein translocase subunit secyALO61_03133Q9HWF5Positive4221186 - 422252047915.6
50s ribosomal protein l36ALO61_05037Q48D57Positive4222543 - 42226654665.01
30s ribosomal protein s13ALO61_03134Q48D58Positive4222796 - 422315213370.5
30s ribosomal protein s11ALO61_100226Q48D59Positive4223183 - 422357213616.4
30s ribosomal protein s4ALO61_03135Q48D60Positive4223591 - 422421123077.8
dna-directed rna polymerase subunit alphaALO61_03136Q48D61Positive4224234 - 422523536691.9
50s ribosomal protein l17ALO61_03137Q4ZMR9Positive4225277 - 422566314497.7

Displaying genes 3931 – 3940 of 5307 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

324 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000433malonateC3H2O4Chemical structure of malonateNot available
Average102.0456Da
Monoisotopic101.9953086Da

Displaying 1–10 of 324 metabolites

Health Effects

Health ConditionRelationReference
Olive knotCausesPMC10420344
Olive knot diseaseCausesPMC10420344
Olive knot diseaseCausesPMC6638699
Bacterial canker of kiwifruitCausesPMC8815115
Disease of the ornamental plant mandevilla spp.CausesPMC8815115
Bacterial cankerCausesPMC8815115
Bacterial canker diseaseCausesPMC8815115

Displaying health effects 1 – 7 of 7 in total