Pseudomonas syringae pv. apii strain ICMP2814

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. apii strain ICMP2814 is a notable bacterial strain characterized by having a single replicon. This trait may suggest a streamlined genomic structure that could influence its adaptability and pathogenicity. The strain is cataloged under the accession number LJPR00000000.1, which provides a reference point for its genetic material in biological databases. Pseudomonas syringae is recognized for its role as a plant pathogen, particularly affecting various crops. The specific pathovar, apii, is known to cause disease in plants, and understanding the genetic makeup of strain ICMP2814 is essential for studying its pathogenic mechanisms and potential control measures. The presence of a single replicon may also indicate a potential for reduced genetic redundancy, which could affect the strain's evolutionary strategies. In microbial ecology, strains with streamlined genomes can often adapt more rapidly to environmental changes or host defenses, making them significant in agricultural contexts. In summary, the characteristics of Pseudomonas syringae pv. apii strain ICMP2814, particularly its single replicon and accession number, highlight its relevance in plant pathology and underscore the importance of genetic research in understanding and managing plant diseases caused by this bacterium.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae group genomosp. 3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas syringae pv. apii strain ICMP2814
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. apii strain ICMP2814

Gene Summary

Adenine Count

1236576 bp

Thymine Count

1260958 bp

Guanine Count

1785648 bp

Cytosine Count

1770887 bp

Genome Length

6054298 bp

Protein-coding Genes

5387 genes

Non-Coding Genes

145 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tyrosine recombinase xercALO87_100010Q88B11Negative439894 - 44079333819.3
uncharacterized proteinALO87_02241Not AvailableNegative440796 - 44153027048.5
diaminopimelate epimeraseALO87_02242Q88B09Negative441544 - 44237430304.4
diaminopimelate decarboxylaseALO87_02243O05321Negative442379 - 44362645270.0
lipoprotein lpplALO87_02244Not AvailableNegative443636 - 4437825135.28
frataxin-like proteinALO87_05010Q88B06Positive443809 - 44432119389.6
uncharacterized proteinALO87_05011Not AvailablePositive444324 - 4445608662.29
nucleoside diphosphate kinase regulatorALO87_100399P0AFW6Positive444659 - 44510516180.2
dienelactone hydrolase family proteinALO87_01086Q7DFU6Negative445349 - 44623632261.2
transcriptional regulator, lysr familyALO87_01087P0A4T4Positive447617 - 44856734153.9

Displaying genes 471 – 480 of 5532 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

315 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000433malonateC3H2O4Chemical structure of malonateNot available
Average102.0456Da
Monoisotopic101.9953086Da

Displaying 1–10 of 315 metabolites

Health Effects

No health effects information available for this bacterium.