Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas syringae |
| Strain | pv. atrofaciens strain ICMP4394 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Metazoa, Viridiplantae |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1237723 bp
Thymine Count
1227659 bp
Guanine Count
1764699 bp
Cytosine Count
1781727 bp
Genome Length
6012246 bp
Protein-coding Genes
5103 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| virk family protein | ALO42_00778 | Not Available | Negative | 4019932 - 4020360 | 14980.7 |
| histidine kinase, hamp region:bacterial chemotaxis sensor y transducer | ALO42_04467 | Not Available | Positive | 4020573 - 4020911 | 12302.0 |
| methyl-accepting chemotaxis protein | ALO42_03520 | Not Available | Negative | 4022176 - 4023795 | 57810.7 |
| abc transporter atp-binding protein | ALO42_03521 | Not Available | Positive | 4025059 - 4026099 | 38123.2 |
| spermidine/putrescine abc-type transport system, permease protein | ALO42_03522 | Not Available | Positive | 4026096 - 4026968 | 31881.4 |
| spermidine/putrescine abc-type transport system, permease protein | ALO42_03523 | Not Available | Positive | 4026972 - 4027766 | 28755.0 |
| 2fe-2s iron-sulfur cluster binding protein | ALO42_101592 | Not Available | Positive | 4027783 - 4028073 | 10299.5 |
| putative nad-dependent dehydrogenase in polyamine uptake protein cluster | ALO42_03524 | Not Available | Positive | 4028070 - 4029461 | 49320.2 |
| spermidine/putrescine-binding periplasmic protein | ALO42_101355 | Not Available | Positive | 4030504 - 4031691 | 43230.2 |
| sodium /hydrogen antiporter, nhap family | ALO42_03525 | Not Available | Positive | 4031841 - 4033187 | 48105.6 |
Pathways
1315 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Chlorosis | Causes | PMC3202874 |
| Necrosis | Causes | PMC3202874 |
| Foliar necroses and cankers | Causes | PMC6638699 |
| Bacterial canker | Causes | PMC8815115 |
| Blight | Causes | PMC12030312 |
| Plant diseases | Causes | PMC3029378 |
| Bacterial canker | Causes | PMC4803819 |
| Cherry canker | Causes | PMC9305585 |









