Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas syringae |
| Strain | pv. atrofaciens strain ICMP4394 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Metazoa, Viridiplantae |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1237723 bp
Thymine Count
1227659 bp
Guanine Count
1764699 bp
Cytosine Count
1781727 bp
Genome Length
6012246 bp
Protein-coding Genes
5103 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system effector avre1 | ALO42_04611 | Not Available | Negative | 3879951 - 3885320 | 194595.0 |
| slt protein | ALO42_01269 | Not Available | Positive | 3885539 - 3887062 | 55962.8 |
| type iii secretino system transcriptional regulator hrpr | ALO42_01270 | Not Available | Positive | 3888137 - 3889081 | 35009.4 |
| type iii secretion system transcriptional regulator hrps | ALO42_01271 | Not Available | Positive | 3889127 - 3890035 | 33450.5 |
| type iii secretion system helper protein hrpa2 | ALO42_01272 | Not Available | Positive | 3890128 - 3890454 | 11006.8 |
| type iii secretion system helper protein hrpz1 | ALO42_01273 | Not Available | Positive | 3890504 - 3891535 | 34721.6 |
| type iii secretion system protein hrpb | ALO42_01274 | Not Available | Positive | 3891563 - 3891937 | 12742.2 |
| type iii secretion system protein hrcj | ALO42_01275 | Not Available | Positive | 3891946 - 3892752 | 29182.6 |
| type iii secretion system protein hrpd | ALO42_01276 | Not Available | Positive | 3892752 - 3893279 | 19939.6 |
| type iii secretion sustem protein hrpe | ALO42_04613 | Not Available | Positive | 3893313 - 3893653 | 13039.6 |
Pathways
1315 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Chlorosis | Causes | PMC3202874 |
| Necrosis | Causes | PMC3202874 |
| Foliar necroses and cankers | Causes | PMC6638699 |
| Bacterial canker | Causes | PMC8815115 |
| Blight | Causes | PMC12030312 |
| Plant diseases | Causes | PMC3029378 |
| Bacterial canker | Causes | PMC4803819 |
| Cherry canker | Causes | PMC9305585 |









