Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas syringae |
| Strain | pv. atrofaciens strain ICMP4394 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Metazoa, Viridiplantae |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1237723 bp
Thymine Count
1227659 bp
Guanine Count
1764699 bp
Cytosine Count
1781727 bp
Genome Length
6012246 bp
Protein-coding Genes
5103 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | ALO42_04655 | Not Available | Negative | 3863354 - 3863520 | 5952.37 |
| drug/metabolite transporter superfamily permease | ALO42_01446 | Not Available | Positive | 3863586 - 3864524 | 32952.3 |
| histidine kinase, hamp region: chemotaxis sensory transducer | ALO42_04656 | Not Available | Negative | 3864558 - 3866603 | 72191.3 |
| saccharopine dehydrogenase | ALO42_01448 | Not Available | Negative | 3866755 - 3867969 | 43717.6 |
| n-acetyltransferase gcn5 | ALO42_01449 | Not Available | Positive | 3868038 - 3868553 | 19543.4 |
| taurine dioxygenase | ALO42_01450 | Not Available | Negative | 3868596 - 3869465 | 31942.2 |
| amino acid adenylation | ALO42_04659 | Not Available | Negative | 3869561 - 3878618 | 328610.0 |
| yd repeat protein | ALO42_01593 | Not Available | Positive | 3878619 - 3878970 | 13446.7 |
| type iii effector hopm1 | ALO42_01266 | Not Available | Positive | 3878971 - 3879389 | 14552.1 |
| uncharacterized protein | ALO42_01267 | Not Available | Positive | 3879494 - 3879889 | 14652.4 |
Pathways
1315 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Chlorosis | Causes | PMC3202874 |
| Necrosis | Causes | PMC3202874 |
| Foliar necroses and cankers | Causes | PMC6638699 |
| Bacterial canker | Causes | PMC8815115 |
| Blight | Causes | PMC12030312 |
| Plant diseases | Causes | PMC3029378 |
| Bacterial canker | Causes | PMC4803819 |
| Cherry canker | Causes | PMC9305585 |









