Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas syringae |
| Strain | pv. atrofaciens strain ICMP4394 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Metazoa, Viridiplantae |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1237723 bp
Thymine Count
1227659 bp
Guanine Count
1764699 bp
Cytosine Count
1781727 bp
Genome Length
6012246 bp
Protein-coding Genes
5103 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| non-ribosomal peptide synthetase | ALO42_05237 | Not Available | Positive | 2899684 - 2902162 | 89951.5 |
| macrolide rnd-type efflux transporter, membrane-fusion protein | ALO42_05323 | Not Available | Negative | 2902163 - 2903331 | 42278.9 |
| regulatory protein, luxr | ALO42_03947 | Not Available | Positive | 2904073 - 2904807 | 26868.1 |
| unknown protein sequence | ALO42_05324 | Not Available | Positive | 2906838 - 2907062 | 8301.04 |
| dimethylmenaquinone methyltransferase family protein | ALO42_03948 | Not Available | Negative | 2908376 - 2909053 | 23932.8 |
| d-3-phosphoglycerate dehydrogenase | ALO42_03949 | Not Available | Positive | 2909293 - 2910270 | 35443.8 |
| major facilitator superfamily transporter | ALO42_102866 | Not Available | Positive | 2910349 - 2911368 | 37885.0 |
| rnd efflux system, outer membrane lipoprotein, nodt | ALO42_04710 | Not Available | Negative | 2911369 - 2911572 | 7278.48 |
| rhs family protein with paar motif | ALO42_04597 | Not Available | Negative | 2911573 - 2911967 | 15044.3 |
| hypothetical protein | ALO42_200003 | Not Available | Positive | 2912682 - 2913197 | 19121.2 |
Pathways
1315 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Chlorosis | Causes | PMC3202874 |
| Necrosis | Causes | PMC3202874 |
| Foliar necroses and cankers | Causes | PMC6638699 |
| Bacterial canker | Causes | PMC8815115 |
| Blight | Causes | PMC12030312 |
| Plant diseases | Causes | PMC3029378 |
| Bacterial canker | Causes | PMC4803819 |
| Cherry canker | Causes | PMC9305585 |









