Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas syringae |
| Strain | pv. atrofaciens strain ICMP4394 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Metazoa, Viridiplantae |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1237723 bp
Thymine Count
1227659 bp
Guanine Count
1764699 bp
Cytosine Count
1781727 bp
Genome Length
6012246 bp
Protein-coding Genes
5103 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein | ALO42_01888 | Not Available | Positive | 2883562 - 2883942 | 13856.8 |
| heavy metal translocating p-type atpase | ALO42_100129 | Not Available | Positive | 2883964 - 2886210 | 78887.1 |
| nh synthetase | ALO42_00969 | Not Available | Negative | 2886870 - 2887697 | 29893.6 |
| nicotinate phosphoribosyltransferase | ALO42_00970 | Not Available | Negative | 2887724 - 2888947 | 46678.5 |
| lysr family transcriptional regulator | ALO42_04531 | Not Available | Negative | 2889047 - 2889955 | 34485.4 |
| high affinity branched-chain amino acid abc transporter, periplasmic substrate-binding protein | ALO42_00972 | Not Available | Positive | 2890452 - 2891588 | 39837.4 |
| branched-chain amino acid abc-type transport system, permease protein | ALO42_00973 | Not Available | Positive | 2891747 - 2892664 | 32735.2 |
| branched-chain amino acid abc-type transport system, permease protein | ALO42_00974 | Not Available | Positive | 2892667 - 2893980 | 47232.5 |
| high-affinity branched-chain amino acid transport system, atp-binding protein | ALO42_00975 | Not Available | Positive | 2894849 - 2895565 | 26200.1 |
| putative malonic semialdehyde reductase | ALO42_00976 | Not Available | Positive | 2896286 - 2897050 | 27323.6 |
Pathways
1315 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Chlorosis | Causes | PMC3202874 |
| Necrosis | Causes | PMC3202874 |
| Foliar necroses and cankers | Causes | PMC6638699 |
| Bacterial canker | Causes | PMC8815115 |
| Blight | Causes | PMC12030312 |
| Plant diseases | Causes | PMC3029378 |
| Bacterial canker | Causes | PMC4803819 |
| Cherry canker | Causes | PMC9305585 |









