Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas syringae |
| Strain | pv. atrofaciens strain ICMP4394 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Metazoa, Viridiplantae |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1237723 bp
Thymine Count
1227659 bp
Guanine Count
1764699 bp
Cytosine Count
1781727 bp
Genome Length
6012246 bp
Protein-coding Genes
5103 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mlta-interacting mipa family protein | ALO42_00188 | Not Available | Positive | 2804108 - 2804956 | 30509.7 |
| secretion protein hlyd | ALO42_102712 | Not Available | Positive | 2805015 - 2805803 | 27708.2 |
| type i secretion system atpase, prtd | ALO42_01509 | Not Available | Positive | 2805804 - 2806117 | 10922.2 |
| type i secretion membrane fusion protein, hlyd | ALO42_01510 | Not Available | Positive | 2806131 - 2807453 | 48695.6 |
| outer membrane channel protein tolc | ALO42_01511 | Not Available | Positive | 2807456 - 2808856 | 51433.6 |
| glycosyl transferase, group 1 | ALO42_04683 | Not Available | Negative | 2808900 - 2810153 | 46563.4 |
| bifunctional mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | ALO42_01513 | Not Available | Positive | 2810327 - 2811745 | 52098.1 |
| phage terminase large subunit family protein | ALO42_01822 | Not Available | Negative | 2811791 - 2812155 | 13961.4 |
| hypothetical protein | ALO42_200077 | Not Available | Negative | 2812188 - 2812379 | 6834.55 |
| non-ribosomal peptide synthetase | ALO42_01537 | Not Available | Positive | 2812458 - 2812757 | 11092.3 |
Pathways
1315 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Chlorosis | Causes | PMC3202874 |
| Necrosis | Causes | PMC3202874 |
| Foliar necroses and cankers | Causes | PMC6638699 |
| Bacterial canker | Causes | PMC8815115 |
| Blight | Causes | PMC12030312 |
| Plant diseases | Causes | PMC3029378 |
| Bacterial canker | Causes | PMC4803819 |
| Cherry canker | Causes | PMC9305585 |









