Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas syringae |
| Strain | pv. atrofaciens strain ICMP4394 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Metazoa, Viridiplantae |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1237723 bp
Thymine Count
1227659 bp
Guanine Count
1764699 bp
Cytosine Count
1781727 bp
Genome Length
6012246 bp
Protein-coding Genes
5103 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein translocase subunit secd | ALO42_00723 | Not Available | Positive | 2765346 - 2767214 | 67406.5 |
| protein-export membrane protein secf | ALO42_04458 | Not Available | Positive | 2767224 - 2768135 | 33001.6 |
| putative outer membrane lipoprotein with glycine-zipper 2tm domain | ALO42_00725 | Not Available | Positive | 2768244 - 2768783 | 18582.3 |
| inositol monophosphatase | ALO42_04459 | Not Available | Negative | 2768850 - 2769665 | 29547.3 |
| rna methyltransferase | ALO42_00727 | Not Available | Positive | 2769881 - 2770648 | 27663.2 |
| serine acetyltransferase | ALO42_00728 | Not Available | Positive | 2770648 - 2771424 | 28115.8 |
| iron-sulfur cluster assembly protein transcriptoinal regulator iscr | ALO42_100248 | Not Available | Positive | 2771583 - 2772074 | 17899.4 |
| cysteine desulfurase iscs | ALO42_00729 | Not Available | Positive | 2772092 - 2773333 | 45527.3 |
| scaffold protein | ALO42_00730 | Not Available | Positive | 2773415 - 2773801 | 13856.6 |
| iron-sulfur cluster assembly protein isca | ALO42_00731 | Not Available | Positive | 2773873 - 2774196 | 11529.6 |
Pathways
1315 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Chlorosis | Causes | PMC3202874 |
| Necrosis | Causes | PMC3202874 |
| Foliar necroses and cankers | Causes | PMC6638699 |
| Bacterial canker | Causes | PMC8815115 |
| Blight | Causes | PMC12030312 |
| Plant diseases | Causes | PMC3029378 |
| Bacterial canker | Causes | PMC4803819 |
| Cherry canker | Causes | PMC9305585 |









