Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas syringae |
| Strain | pv. atrofaciens strain ICMP4394 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Metazoa, Viridiplantae |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1237723 bp
Thymine Count
1227659 bp
Guanine Count
1764699 bp
Cytosine Count
1781727 bp
Genome Length
6012246 bp
Protein-coding Genes
5103 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system protein hrpq | ALO42_00714 | Not Available | Negative | 2753168 - 2754142 | 35316.8 |
| type iii secretion protein hrcv | ALO42_00715 | Not Available | Negative | 2754176 - 2756263 | 76539.8 |
| type iii secretion outer membrane protein popn | ALO42_00716 | Not Available | Negative | 2756263 - 2757369 | 40622.6 |
| rna polymerase sigma factor | ALO42_00717 | Not Available | Positive | 2757611 - 2758165 | 21118.3 |
| type iii secretion system helper protein hrpk1 | ALO42_00718 | Not Available | Positive | 2758239 - 2760545 | 79962.1 |
| hypothetical protein | ALO42_00719 | Not Available | Positive | 2761086 - 2762234 | 41957.9 |
| Trna-leu | Not Available | Not Available | Positive | 2762497 - 2762581 | Not Available |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | ALO42_00720 | Not Available | Positive | 2762699 - 2763763 | 38714.1 |
| queuine trna-ribosyltransferase | ALO42_00721 | Not Available | Positive | 2763760 - 2764893 | 41717.7 |
| preprotein translocase, subunit yajc | ALO42_00722 | Not Available | Positive | 2764947 - 2765282 | 11826.5 |
Pathways
1315 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Chlorosis | Causes | PMC3202874 |
| Necrosis | Causes | PMC3202874 |
| Foliar necroses and cankers | Causes | PMC6638699 |
| Bacterial canker | Causes | PMC8815115 |
| Blight | Causes | PMC12030312 |
| Plant diseases | Causes | PMC3029378 |
| Bacterial canker | Causes | PMC4803819 |
| Cherry canker | Causes | PMC9305585 |









