Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas syringae |
| Strain | pv. atrofaciens strain ICMP4394 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Metazoa, Viridiplantae |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1237723 bp
Thymine Count
1227659 bp
Guanine Count
1764699 bp
Cytosine Count
1781727 bp
Genome Length
6012246 bp
Protein-coding Genes
5103 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdia-regulated protein | ALO42_01015 | Not Available | Positive | 198190 - 199095 | 33353.7 |
| ribose-5-phosphate isomerase a | ALO42_01016 | Not Available | Negative | 199141 - 199812 | 23379.2 |
| threonine dehydratase | ALO42_04542 | Not Available | Positive | 199880 - 201228 | 48918.6 |
| putative transposase | ALO42_01371 | Not Available | Negative | 201423 - 201881 | 17468.7 |
| transcriptional regulator gbdr | ALO42_01372 | Not Available | Negative | 202006 - 203112 | 41127.8 |
| choline abc-type transport system, periplasmic substrate-binding protein | ALO42_01373 | Not Available | Positive | 203892 - 204839 | 34432.4 |
| choline abc-type transport system, permease protein | ALO42_01374 | Not Available | Positive | 204907 - 205752 | 30491.3 |
| glycine/betaine/l-proline abc transporter, atp-binding subunit | ALO42_100249 | Not Available | Positive | 205749 - 206927 | 43368.8 |
| serine hydroxymethyltransferase | ALO42_01375 | Not Available | Positive | 207188 - 208441 | 44934.4 |
| sarcosine oxidase, beta subunit | ALO42_01376 | Not Available | Positive | 208459 - 209709 | 45298.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Chlorosis | Causes | PMC3202874 |
| Necrosis | Causes | PMC3202874 |
| Foliar necroses and cankers | Causes | PMC6638699 |
| Bacterial canker | Causes | PMC8815115 |
| Blight | Causes | PMC12030312 |
| Plant diseases | Causes | PMC3029378 |
| Bacterial canker | Causes | PMC4803819 |
| Cherry canker | Causes | PMC9305585 |









