Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas syringae |
| Strain | pv. atrofaciens strain ICMP4394 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Metazoa, Viridiplantae |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1237723 bp
Thymine Count
1227659 bp
Guanine Count
1764699 bp
Cytosine Count
1781727 bp
Genome Length
6012246 bp
Protein-coding Genes
5103 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix, arac type:arac protein, arabinose-binding/dimerization | ALO42_02301 | Not Available | Positive | 2526478 - 2527353 | 32313.5 |
| iron uptake protein | ALO42_100396 | Not Available | Negative | 2527342 - 2527677 | 11987.2 |
| membrane protein | ALO42_02302 | Not Available | Negative | 2527674 - 2529239 | 57775.8 |
| uncharacterized protein | ALO42_02303 | Not Available | Negative | 2529236 - 2529580 | 12187.2 |
| rna polymerase sigma factor, feci/pupi family | ALO42_02304 | Not Available | Positive | 2529764 - 2530285 | 19441.6 |
| fecr protein | ALO42_02305 | Not Available | Positive | 2530282 - 2531259 | 35520.6 |
| iron dicitrate transport protein feca | ALO42_02306 | Not Available | Positive | 2531830 - 2534178 | 85515.4 |
| ribosomal subunit interface protein, raia superfamily | ALO42_02307 | Not Available | Positive | 2534452 - 2534880 | 16005.6 |
| uncharacterized protein | ALO42_02308 | Not Available | Positive | 2535720 - 2536079 | 12865.5 |
| putative lipoprotein | ALO42_02309 | Not Available | Positive | 2536341 - 2536673 | 12920.1 |
Pathways
1315 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Chlorosis | Causes | PMC3202874 |
| Necrosis | Causes | PMC3202874 |
| Foliar necroses and cankers | Causes | PMC6638699 |
| Bacterial canker | Causes | PMC8815115 |
| Blight | Causes | PMC12030312 |
| Plant diseases | Causes | PMC3029378 |
| Bacterial canker | Causes | PMC4803819 |
| Cherry canker | Causes | PMC9305585 |









