Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas syringae |
| Strain | pv. atrofaciens strain ICMP4394 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Metazoa, Viridiplantae |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Plant |
Gene Summary
Adenine Count
1237723 bp
Thymine Count
1227659 bp
Guanine Count
1764699 bp
Cytosine Count
1781727 bp
Genome Length
6012246 bp
Protein-coding Genes
5103 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative lipopolysaccharide abc-type transport system, permease protein lptf | ALO42_02253 | Not Available | Negative | 2468387 - 2469514 | 41720.7 |
| putative cytosol aminopeptidase | ALO42_02254 | Not Available | Positive | 2469834 - 2471324 | 52382.6 |
| dna polymerase iii, chi subunit | ALO42_02255 | Not Available | Positive | 2471382 - 2471810 | 16165.0 |
| uncharacterized protein | ALO42_02256 | Not Available | Positive | 2471818 - 2472252 | 15979.7 |
| yd repeat protein | ALO42_02257 | Not Available | Negative | 2472290 - 2473402 | 41395.3 |
| valine--trna ligase | ALO42_02258 | Not Available | Positive | 2473571 - 2476417 | 106961.0 |
| ribosomal rna large subunit methyltransferase f | ALO42_02259 | Not Available | Positive | 2476575 - 2477561 | 36119.4 |
| hu family dna-binding protein hu-nu | ALO42_02260 | Not Available | Negative | 2477750 - 2478031 | 9801.98 |
| nucleoid-associated protein | ALO42_100574 | Not Available | Positive | 2478149 - 2479426 | 47238.7 |
| glutaredoxin nrdh | ALO42_02261 | Not Available | Positive | 2479432 - 2479782 | 13163.0 |
Pathways
1315 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Chlorosis | Causes | PMC3202874 |
| Necrosis | Causes | PMC3202874 |
| Foliar necroses and cankers | Causes | PMC6638699 |
| Bacterial canker | Causes | PMC8815115 |
| Blight | Causes | PMC12030312 |
| Plant diseases | Causes | PMC3029378 |
| Bacterial canker | Causes | PMC4803819 |
| Cherry canker | Causes | PMC9305585 |









