Rhizobium sp. AAP116

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. AAP116 is characterized as a rod-shaped bacterium equipped with flagella, which suggests motility in its environment. This trait may facilitate its ability to colonize plant roots, an important aspect of its ecological role. The organism contains a single replicon, indicating a streamlined genetic structure that may contribute to its efficiency in replicating and adapting to environmental conditions. The accession number LJIB00000000.1 indicates that Rhizobium sp. AAP116 has been cataloged for genomic information, which can be utilized for further research and understanding of its genetic makeup. As a member of the Rhizobium genus, this bacterium is likely involved in symbiotic relationships with leguminous plants, forming root nodules that facilitate nitrogen fixation. This biological interaction is critical for enhancing soil fertility and supporting plant growth, particularly in nitrogen-poor environments. In summary, Rhizobium sp. AAP116 possesses distinct traits such as its rod shape, flagella presence, and single replicon, which may contribute to its ecological role as a nitrogen-fixing symbiont. Understanding these characteristics can provide insights into its potential applications in agriculture and ecosystem management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. AAP116
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. AAP116
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. AAP116


Gene Summary

Adenine Count

873401 bp

Thymine Count

894962 bp

Guanine Count

1419722 bp

Cytosine Count

1390456 bp

Genome Length

4578541 bp

Protein-coding Genes

4192 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s ribosomal rnaNot AvailableNot AvailablePositive274 - 1767Not Available
aldehyde dehydrogenaseIP85_00005P25553Negative1 - 130947109.4
lysr family transcriptional regulatorIP85_00010Not AvailableNegative1411 - 232834107.8
l-lactate dehydrogenaseIP85_00015B9JTR0Positive2506 - 343832376.0
23s ribosomal rnaNot AvailableNot AvailablePositive2806 - 5611Not Available
arsr family transcriptional regulatorIP85_00020Q87AD5Positive3525 - 389013449.5
lysr family transcriptional regulatorIP85_00025Q9X725Positive3919 - 485734482.9
formate dehydrogenaseIP85_00030Not AvailablePositive4924 - 540317372.1
formate dehydrogenaseIP85_00035Q46507Positive5400 - 696855333.9
5s ribosomal rnaNot AvailableNot AvailablePositive5720 - 5834Not Available

Displaying genes 1 – 10 of 4242 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

290 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 290 metabolites

Health Effects

No health effects information available for this bacterium.