Candidatus Erwinia dacicola strain Oroville

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Erwinia

Description

Candidatus Erwinia dacicola strain Oroville is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility. This strain is notable for having a single replicon, indicating a streamlined genetic architecture. The genomic sequence of this strain is accessible under the accession number LJAM00000000.2. The rod shape and flagellar presence may confer advantages in its ecological niche, potentially facilitating movement towards nutrients or away from harmful substances in its environment. As a member of the Erwinia genus, Candidatus Erwinia dacicola is often associated with plant hosts, where it may play a role in interactions that could be beneficial or pathogenic. The single replicon may also imply a simpler and more efficient replication process, which can be advantageous in various environmental conditions. Understanding the characteristics of Candidatus Erwinia dacicola strain Oroville can provide insights into its ecological role, particularly in relation to its interactions with plant systems. The motility afforded by flagella could influence its distribution and colonization patterns, impacting plant health and ecosystem dynamics. Further studies on this strain may elucidate its specific functions and interactions within its ecological niche, contributing to a broader understanding of microbial roles in plant-associated environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusErwinia
SpeciesCandidatus Erwinia dacicola
Strainstrain Oroville

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Candidatus Erwinia dacicola strain Oroville
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Erwinia dacicola strain Oroville edac.contig.1030_1,

Gene Summary

Adenine Count

674588 bp

Thymine Count

680180 bp

Guanine Count

749447 bp

Cytosine Count

753809 bp

Genome Length

2858157 bp

Protein-coding Genes

3741 genes

Non-Coding Genes

341 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein ycglACZ87_02087Not AvailablePositive1718556 - 17186724413.63
putative ycgl domain-containing proteinACZ87_02088Not AvailablePositive1718680 - 17188114944.3
putative lipoproteinACZ87_02089Not AvailablePositive1718899 - 17191418161.84
hypothetical proteinACZ87_02090Not AvailableNegative1719151 - 17192483916.81
thiamine/thiaminee pyrophosphate abc transporter, thiamine/thiaminee pyrophospate-binding proteinACZ87_02091Not AvailablePositive1719374 - 172036036454.6
thiamine/thiamine pyrophosphate abc transporter, permease proteinACZ87_02092Not AvailablePositive1720336 - 172194658777.7
thiamine abc transporter, atp-binding proteinACZ87_02093Not AvailablePositive1721930 - 172264325688.3
inner membrane yabi domain proteinACZ87_02094Not AvailableNegative1722712 - 17228465188.29
transposase, mutator family proteinACZ87_02095Not AvailableNegative1722877 - 17230687184.6
hypothetical proteinACZ87_02096Not AvailablePositive1723092 - 17232174617.63

Displaying genes 2091 – 2100 of 4082 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.