Candidatus Erwinia dacicola strain Oroville

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Erwinia

Description

Candidatus Erwinia dacicola strain Oroville is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility. This strain is notable for having a single replicon, indicating a streamlined genetic architecture. The genomic sequence of this strain is accessible under the accession number LJAM00000000.2. The rod shape and flagellar presence may confer advantages in its ecological niche, potentially facilitating movement towards nutrients or away from harmful substances in its environment. As a member of the Erwinia genus, Candidatus Erwinia dacicola is often associated with plant hosts, where it may play a role in interactions that could be beneficial or pathogenic. The single replicon may also imply a simpler and more efficient replication process, which can be advantageous in various environmental conditions. Understanding the characteristics of Candidatus Erwinia dacicola strain Oroville can provide insights into its ecological role, particularly in relation to its interactions with plant systems. The motility afforded by flagella could influence its distribution and colonization patterns, impacting plant health and ecosystem dynamics. Further studies on this strain may elucidate its specific functions and interactions within its ecological niche, contributing to a broader understanding of microbial roles in plant-associated environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusErwinia
SpeciesCandidatus Erwinia dacicola
Strainstrain Oroville

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Candidatus Erwinia dacicola strain Oroville
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Erwinia dacicola strain Oroville edac.contig.1030_1,

Gene Summary

Adenine Count

674588 bp

Thymine Count

680180 bp

Guanine Count

749447 bp

Cytosine Count

753809 bp

Genome Length

2858157 bp

Protein-coding Genes

3741 genes

Non-Coding Genes

341 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-metNot AvailableNot AvailablePositive1259962 - 1260038Not Available
membrane-bound lytic murein transglycosylase aACZ87_01496Not AvailablePositive1260241 - 126138341808.8
thif family proteinACZ87_01497Not AvailablePositive1261435 - 126223528586.7
cysteine desulfurase, sulfur acceptor subunit csdeACZ87_01498Not AvailableNegative1262273 - 126271015741.0
cysteine desulfurase, catalytic subunit csdaACZ87_01499Not AvailableNegative1262713 - 126391842661.2
hypothetical proteinACZ87_01500Not AvailablePositive1264149 - 12642985452.28
bacterial regulatory helix-turn-helix, lysr family proteinACZ87_01501Not AvailablePositive1264627 - 12647524630.65
lysr substrate binding domain proteinACZ87_01502Not AvailablePositive1264832 - 126517312739.5
dtdp-4-dehydrorhamnose 3,5-epimeraseACZ87_01503Not AvailableNegative1266293 - 126683520563.4
glucose-1-phosphate thymidylyltransferaseACZ87_01504Not AvailableNegative1266840 - 126771232400.0

Displaying genes 1511 – 1520 of 4082 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.