Loktanella sp. 5RATIMAR09 PM08_043

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Loktanella

Description

Loktanella sp. 5RATIMAR09 PM08_043 is characterized by its single replicon, indicating a streamlined genomic structure that may contribute to its functional efficiency. The organism is cataloged under the accession number LJAL00000000.1, which serves as a unique identifier in genomic databases, facilitating further research and comparison with other strains. This bacterium is part of the Loktanella genus, which is known for its environmental significance, particularly in marine ecosystems. Members of this genus are often isolated from various marine environments, suggesting potential roles in nutrient cycling or interactions with other microbial communities. The single-replicon structure of Loktanella sp. 5RATIMAR09 PM08_043 may reflect adaptations to its ecological niche, potentially enhancing its ability to thrive in specific environmental conditions. Given the lack of additional trait information, such as metabolic capabilities or specific habitat preferences, it is essential to recognize that the ecological insights into Loktanella sp. 5RATIMAR09 PM08_043 remain limited. However, its classification within the Loktanella genus hints at its possible contribution to marine microbial diversity and its role in biogeochemical processes. Further research is necessary to elucidate the specific functions and interactions of this bacterium within its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusLoktanella
SpeciesLoktanella sp. 5RATIMAR09
StrainPM08_043

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Loktanella sp. 5RATIMAR09 PM08_043, whole genome shotgun sequence.

Gene Summary

Adenine Count

784632 bp

Thymine Count

775434 bp

Guanine Count

1062192 bp

Cytosine Count

1076998 bp

Genome Length

3699256 bp

Protein-coding Genes

3522 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
superoxide dismutaseAN191_07110O30970Negative1436531 - 143713022161.8
sarcosine oxidase subunit gammaAN191_07115Not AvailableNegative1437563 - 143813220146.2
sarcosine oxidase subunit alphaAN191_07120O87386Negative1438125 - 1441136108952.0
sarcosine oxidase subunit deltaAN191_07125Not AvailableNegative1441133 - 144146212355.4
hypothetical proteinAN191_07130Not AvailableNegative1441577 - 14417686340.57
sarcosine oxidase subunit betaAN191_07135Q52671Negative1442052 - 144329645077.4
cytochrome c biogenesis protein cychAN191_07140P45399Positive1443499 - 144474044768.2
holliday junction resolvaseAN191_07145Q52673Positive1444737 - 144521317199.1
hypothetical proteinAN191_07150Not AvailablePositive1445210 - 14454559160.16
hypothetical proteinAN191_07155Not AvailablePositive1445592 - 144624825427.4

Displaying genes 1391 – 1400 of 3577 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

264 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 264 metabolites

Health Effects

No health effects information available for this bacterium.