Deinococcus sp. UR1

Kingdom

Thermotogati

Phylum

Deinococcota

Class

Deinococci

Order

Deinococcales

Family

Deinococcaceae

Genus

Deinococcus

Description

Deinococcus sp. UR1 is a notable member of the Deinococcus genus, characterized by the presence of flagella, which contributes to its motility. This organism contains a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The genomic sequence of Deinococcus sp. UR1 is documented under the accession number LIYN00000000.2, providing a reference point for further studies and comparisons with other microbial species. The presence of flagella suggests that Deinococcus sp. UR1 may exhibit motility, allowing it to navigate its environment, which could be beneficial for accessing nutrients and escaping unfavorable conditions. Understanding the motility mechanisms in this species could offer insights into its ecological role and interactions within its habitat. Deinococcus species are often recognized for their resilience to extreme conditions, including radiation and desiccation. While the specific ecological niche of Deinococcus sp. UR1 is not detailed in the provided traits, the flagella may play a role in its survival strategies, enabling it to thrive in diverse environments. This adaptability highlights the potential ecological significance of Deinococcus sp. UR1, suggesting that it may contribute to microbial community dynamics in environments where resilience is critical. Overall, the traits of Deinococcus sp. UR1 underscore its potential for further research in microbial ecology and resilience mechanisms.

Taxonomy

KingdomThermotogati
PhylumDeinococcota
ClassDeinococci
OrderDeinococcales
FamilyDeinococcaceae
GenusDeinococcus
SpeciesDeinococcus sp. UR1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Deinococcus sp. UR1 NODE_74_length_510_cov_383.251, whole genome

Gene Summary

Adenine Count

689355 bp

Thymine Count

680753 bp

Guanine Count

1550397 bp

Cytosine Count

1552333 bp

Genome Length

4472838 bp

Protein-coding Genes

3982 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate kinaseAMD26_003175Q9RW93Negative653357 - 65395922607.8
chorismate synthaseAMD26_003185Q9RW94Negative654153 - 65530140962.8
secretinAMD26_003190Q9RW95Negative655408 - 65742669585.7
hypothetical proteinAMD26_003195Not AvailableNegative657430 - 65858737537.2
pilus assembly protein piloAMD26_003200Not AvailableNegative658584 - 65923122582.1
fimbrial assembly proteinAMD26_003205Not AvailableNegative659221 - 65991324276.4
pilus assembly protein pilmAMD26_003210G3XD28Negative659906 - 66108442558.1
hypothetical proteinAMD26_003215Not AvailableNegative661446 - 66220125362.4
udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligaseAMD26_003220O33804Negative662270 - 66356244652.8
formamidaseAMD26_003225Q07838Positive663602 - 66459134284.7

Displaying genes 631 – 640 of 4038 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

210 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 210 metabolites

Health Effects

No health effects information available for this bacterium.