Clostridium ljungdahlii strain ERI-2

Gram-positiveRodMotileAerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium ljungdahlii strain ERI-2 is a mesophilic, aerobic, gram-positive bacterium characterized by its rod shape and ability to move via flagella. This species is a chemoorganotroph, utilizing organic compounds as its energy source. It typically exists in pairs or singles and is noted for its capacity to sporulate, enabling it to survive adverse environmental conditions. C. ljungdahlii strain ERI-2 is free-living and has been identified in terrestrial habitats, indicating its adaptability to soil environments. This strain is of particular interest due to its potential interactions with hosts, specifically Gallus gallus (the domestic chicken), which may suggest ecological roles in gut microbiota or soil health related to poultry farming. The organism has a single replicon and a single membrane, features that can impact its genetic stability and physiological processes. The presence of flagella contributes to its mobility, allowing for efficient exploration of its environment in search of nutrients. Understanding the ecological role of C. ljungdahlii strain ERI-2 could provide insights into its contributions to soil ecosystems and interactions with avian hosts, particularly in the context of nutrient cycling and microbial community dynamics. This bacterium exemplifies the diverse adaptations of microorganisms to terrestrial life and their potential applications in agriculture and biotechnology.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium ljungdahlii
Strainstrain ERI-2

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridium ljungdahlii strain ERI-2
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Gallus gallus
Cell arrangementPairs-Singles
SporulationSporulating
Energy source Chemoorganotroph
PathogenicityNot Available

Genome Summary

Clostridium ljungdahlii strain ERI-2 scaffold9, whole genome

Gene Summary

Adenine Count

1533440 bp

Thymine Count

1472292 bp

Guanine Count

709879 bp

Cytosine Count

648289 bp

Genome Length

4363917 bp

Protein-coding Genes

4029 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein translocase subunit secaWY13_02121A5N3B2Positive2186045 - 218855895663.5
peptide chain release factor 2WY13_02122Q0TNE1Positive2188691 - 218968637743.9
enterobactin exporter entsWY13_02123Not AvailablePositive2189841 - 219107945936.7
nad(p)-specific glutamate dehydrogenaseWY13_02124P31026Positive2191245 - 219259149033.6
peptidase family m28WY13_02125Not AvailableNegative2192763 - 219409750748.6
30s ribosomal protein s1WY13_02126O31489Positive2194259 - 219641280081.6
riboflavin transporter ribuWY13_02127E5QVT2Positive2196643 - 219735325487.9
hypothetical proteinWY13_02128Not AvailablePositive2197467 - 219926067319.0
flagellar biosynthetic protein flhbWY13_02129Not AvailablePositive2199336 - 21996089930.91
calcineurin-like phosphoesterase superfamily domain proteinWY13_02130Not AvailablePositive2199613 - 220029926214.3

Displaying genes 2121 – 2130 of 4136 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

173 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00007052-dehydro-3-deoxy-D-arabinonateC5H7O5Chemical structure of 2-dehydro-3-deoxy-D-arabinonateNot available
Average147.107Da
Monoisotopic147.0298969Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da

Displaying 1–10 of 173 metabolites

Health Effects

No health effects information available for this bacterium.