Viridibacillus arvi strain DSM 16317

rodanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Caryophanaceae

Genus

Viridibacillus

Description

Viridibacillus arvi strain DSM 16317 is a Gram-positive, anaerobic bacterium characterized by its rod shape and ability to form spores. It possesses a single replicon, which is indicative of its genetic structure. The strain is cataloged under the accession number LILB00000000.1, which allows for its identification and further study within microbial databases. As a spore-forming organism, Viridibacillus arvi has the potential to withstand harsh environmental conditions, enabling it to survive in anaerobic habitats. This characteristic is significant for its ecological role, as it may contribute to nutrient cycling in environments where oxygen is limited. The ability to form spores also allows for prolonged dormancy, facilitating the survival of the bacterium until conditions become favorable for growth. In ecological contexts, the anaerobic nature of Viridibacillus arvi suggests that it may play a role in the decomposition of organic matter in anaerobic environments, such as wetlands or deep sediments. Its spore-forming capability could aid in the dispersal of the organism across varying substrates, enhancing its ecological adaptability. Overall, Viridibacillus arvi strain DSM 16317 exemplifies how specific traits can influence the survival and ecological contributions of microorganisms in anaerobic ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyCaryophanaceae
GenusViridibacillus
SpeciesViridibacillus arvi
Strainstrain DSM 16317

Profile

Physiology
Gram staining propertiesGram-negative / gram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationspore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Viridibacillus arvi strain DSM 16317 Contig27, whole genome

Gene Summary

Adenine Count

1467863 bp

Thymine Count

1569810 bp

Guanine Count

770970 bp

Cytosine Count

890585 bp

Genome Length

4758570 bp

Protein-coding Genes

4275 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide abc transporter substrate-binding proteinAMD00_20860Not AvailablePositive4415378 - 441703962827.0
hypothetical proteinAMD00_20865Not AvailableNegative4417148 - 44173728273.02
peptide abc transporter permeaseAMD00_20875Not AvailableNegative4419517 - 442055138469.8
peptide abc transporter permeaseAMD00_20880A2RI75Negative4420551 - 442147734146.8
hypothetical proteinAMD00_20885Not AvailablePositive4421785 - 442307750958.0
betaine-aldehyde dehydrogenaseAMD00_20890Not AvailableNegative4423200 - 442469353998.2
dihydrodipicolinate synthaseAMD00_20895A0B7E1Negative4424808 - 442570132683.0
hypothetical proteinAMD00_20900Q6HMS9Negative4425724 - 442662633584.9
proline racemaseAMD00_20905Q81PH1Negative4426627 - 442766738129.2
glycine oxidaseAMD00_20910O85228Negative4427667 - 442883943653.4

Displaying genes 4001 – 4010 of 4338 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

231 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000333(1R,4R)-bornane-2,5-dioneC10H14O2Chemical structure of (1R,4R)-bornane-2,5-dioneNot available
Average166.22Da
Monoisotopic166.0993797Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 231 metabolites

Health Effects

No health effects information available for this bacterium.