Phaeobacter sp. 11ANDIMAR09 PM09_101

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Phaeobacter

Description

Phaeobacter sp. 11ANDIMAR09 PM09_101 is a Gram-negative bacterium characterized by its rod shape. This species is notable for possessing a single replicon, which is a defining feature of its genomic structure. The genomic data for this organism is accessible under the accession number LIKT00000000.1. The Gram-negative classification indicates that Phaeobacter sp. 11ANDIMAR09 PM09_101 has a distinctive cell wall structure, typically characterized by a thin peptidoglycan layer surrounded by an outer membrane. This structural attribute often influences the organism's interactions with its environment, including its susceptibility to antibiotics and its role in various ecological niches. The single replicon suggests a streamlined genomic organization, which may facilitate efficient replication and regulation of essential genes. This can be particularly advantageous in competitive environments where rapid adaptation is necessary. In terms of ecological insights, members of the genus Phaeobacter are generally known for their roles in marine environments, where they might contribute to biogeochemical cycles and interact with other marine microorganisms. The capabilities and interactions of Phaeobacter sp. 11ANDIMAR09 PM09_101 within its ecosystem can be influenced by its Gram-negative nature and genomic structure, potentially impacting nutrient cycling and the overall health of marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPhaeobacter
SpeciesPhaeobacter sp. 11ANDIMAR09
StrainPM09_101

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phaeobacter sp. 11ANDIMAR09 PM09_101, whole genome shotgun

Gene Summary

Adenine Count

986307 bp

Thymine Count

983357 bp

Guanine Count

1369809 bp

Cytosine Count

1370359 bp

Genome Length

4709832 bp

Protein-coding Genes

4230 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAN476_19545Not AvailableNegative4123923 - 412478630386.9
trna-binding proteinAN476_19550P37584Negative4124786 - 412512412598.2
tartrate dehydrogenaseAN476_19555P76251Negative4125149 - 412621338567.0
acyl-coa dehydrogenaseAN476_19565P45857Negative4127854 - 412899941229.1
hypothetical proteinAN476_19570Not AvailablePositive4129170 - 413015636835.5
hypothetical proteinAN476_19575Not AvailablePositive4130383 - 413176549698.6
hypothetical proteinAN476_19580Q9M8Y0Negative4131843 - 413406882006.9
gscfa family proteinAN476_19585Not AvailablePositive4134328 - 413541040267.0
hypothetical proteinAN476_19590Not AvailablePositive4135397 - 413618828806.3
preprotein translocase subunit seceAN476_19595Not AvailablePositive4136261 - 41364587269.32

Displaying genes 3811 – 3820 of 4331 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

341 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 341 metabolites

Health Effects

No health effects information available for this bacterium.