Clostridium homopropionicum DSM 5847

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium homopropionicum DSM 5847 is an anaerobic bacterium, indicating that it thrives in environments devoid of oxygen. This characteristic is essential for its metabolic processes and ecological niche, as many Clostridia species play significant roles in anaerobic environments, such as sediments and the gastrointestinal tracts of animals. The strain DSM 5847 has a single replicon, which suggests a streamlined genomic structure that may facilitate efficient replication and transcription under anaerobic conditions. The genomic information is cataloged under the accession number LHUR00000000.1, providing a reference point for researchers looking to study this organism further. The anaerobic lifestyle of Clostridium homopropionicum is particularly relevant in the context of its potential applications in biotechnology and fermentation processes. Its ability to metabolize substrates in the absence of oxygen can be exploited for the production of various organic compounds, including propionic acid, which has implications in food preservation and as a feed additive in livestock. The study of C. homopropionicum DSM 5847 could provide insights into microbial interactions and metabolic pathways in anaerobic environments. Understanding its role within these systems may enhance knowledge of nutrient cycling and the dynamics of microbial communities, particularly in ecosystems where oxygen is limited. This could lead to broader implications for agricultural practices and waste management strategies, highlighting the importance of anaerobic bacteria in ecological balance and sustainability.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium homopropionicum
StrainDSM 5847

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium homopropionicum DSM 5847 CLHOM_contig000068, whole

Gene Summary

Adenine Count

1194665 bp

Thymine Count

1320817 bp

Guanine Count

506628 bp

Cytosine Count

628425 bp

Genome Length

3650535 bp

Protein-coding Genes

3465 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleoid-associated protein ndpaCLHOM_09170Not AvailableNegative966074 - 96711140292.8
sporulation and spore germinationCLHOM_09180Not AvailablePositive967225 - 96828639813.2
cyth domain proteinCLHOM_09190Not AvailablePositive968405 - 96895321283.6
hypothetical proteinCLHOM_09200Not AvailablePositive968953 - 96983434326.6
chaperone protein dnajCLHOM_09210Not AvailablePositive969818 - 97040222696.2
hypothetical proteinCLHOM_09220Not AvailablePositive970416 - 97093119408.9
Trna-glnNot AvailableNot AvailablePositive971003 - 971077Not Available
30s ribosomal protein s1CLHOM_09240Q97I09Negative971145 - 97230843203.0
benzoate 1,2-dioxygenase electron transfer componentCLHOM_09250P23101Positive972568 - 97403154966.6
leucine--trna ligaseCLHOM_09260A0PYK3Positive974381 - 97681992860.8

Displaying genes 951 – 960 of 3586 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

191 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm00008652-oxooctadecanoateC18H33O3Chemical structure of 2-oxooctadecanoateNot available
Average297.46Da
Monoisotopic297.2435185Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da

Displaying 1–10 of 191 metabolites

Health Effects

No health effects information available for this bacterium.