Clostridium homopropionicum DSM 5847

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium homopropionicum DSM 5847 is an anaerobic bacterium, indicating that it thrives in environments devoid of oxygen. This characteristic is essential for its metabolic processes and ecological niche, as many Clostridia species play significant roles in anaerobic environments, such as sediments and the gastrointestinal tracts of animals. The strain DSM 5847 has a single replicon, which suggests a streamlined genomic structure that may facilitate efficient replication and transcription under anaerobic conditions. The genomic information is cataloged under the accession number LHUR00000000.1, providing a reference point for researchers looking to study this organism further. The anaerobic lifestyle of Clostridium homopropionicum is particularly relevant in the context of its potential applications in biotechnology and fermentation processes. Its ability to metabolize substrates in the absence of oxygen can be exploited for the production of various organic compounds, including propionic acid, which has implications in food preservation and as a feed additive in livestock. The study of C. homopropionicum DSM 5847 could provide insights into microbial interactions and metabolic pathways in anaerobic environments. Understanding its role within these systems may enhance knowledge of nutrient cycling and the dynamics of microbial communities, particularly in ecosystems where oxygen is limited. This could lead to broader implications for agricultural practices and waste management strategies, highlighting the importance of anaerobic bacteria in ecological balance and sustainability.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium homopropionicum
StrainDSM 5847

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium homopropionicum DSM 5847 CLHOM_contig000068, whole

Gene Summary

Adenine Count

1194665 bp

Thymine Count

1320817 bp

Guanine Count

506628 bp

Cytosine Count

628425 bp

Genome Length

3650535 bp

Protein-coding Genes

3465 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s ribosomal rnaNot AvailableNot AvailablePositive2 - 1498Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive30 - 2921Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive248 - 363Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive251 - 366Not Available
transposase is116/is110/is902 family proteinCLHOM_00010Not AvailablePositive330 - 162549228.9
r-phenyllactate dehydratase activatorCLHOM_00050G3KIM5Positive4684 - 546027144.9
r-phenyllactate dehydratase subunit alpha precursorCLHOM_00060G3KIM4Positive5491 - 674747148.4
lexa repressorCLHOM_00070Not AvailableNegative7990 - 82509833.73
hypothetical proteinCLHOM_00080Not AvailableNegative8628 - 87534722.82
hypothetical proteinCLHOM_00090Not AvailableNegative8753 - 89778652.46

Displaying genes 61 – 70 of 3586 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

191 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm00008652-oxooctadecanoateC18H33O3Chemical structure of 2-oxooctadecanoateNot available
Average297.46Da
Monoisotopic297.2435185Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da

Displaying 1–10 of 191 metabolites

Health Effects

No health effects information available for this bacterium.