Acidovorax sp. SD340

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Acidovorax

Description

Acidovorax sp. SD340 is a Gram-negative bacterium characterized by its bacilli shape and the presence of flagella, which indicates a capability for motility. This organism has a single replicon, suggesting a streamlined genetic organization that may facilitate its adaptability to various environments. The genomic information for Acidovorax sp. SD340 is accessible under the accession number LHUP00000000.1. The traits of Acidovorax sp. SD340 align with the general characteristics of the Acidovorax genus, which is known for its versatility in degrading a variety of organic compounds. This microbial capability is essential for bioremediation processes, particularly in environments contaminated with organic pollutants. The flagella not only contribute to its motility but may also play a role in its ecological interactions, allowing it to colonize diverse habitats effectively. Understanding the specific traits of Acidovorax sp. SD340 can provide insights into its ecological role, particularly in nutrient cycling and the degradation of pollutants in soil and water ecosystems. The bacterium’s Gram-negative nature and motile bacilli form suggest it could play a significant part in microbiological communities, influencing both microbial dynamics and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusAcidovorax
SpeciesAcidovorax sp. SD340
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Acidovorax sp. SD340
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Acidovorax sp. SD340 contig_221, whole genome shotgun sequence.

Gene Summary

Adenine Count

1164177 bp

Thymine Count

1156705 bp

Guanine Count

2063246 bp

Cytosine Count

2070265 bp

Genome Length

6454393 bp

Protein-coding Genes

5666 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sam-dependent methyltransferaseAE621_06840Q9UTA8Negative1467228 - 146801628467.1
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseAE621_06845C5CKN8Positive1468015 - 146907936046.0
diguanylate cyclaseAE621_06850Not AvailableNegative1469101 - 147023441876.4
spermidine/putrescine abc transporter atpaseAE621_06855Q81GC1Positive1470491 - 147156738440.6
abc transporter substrate-binding proteinAE621_06860Not AvailablePositive1471629 - 147292146990.6
abc transporter permeaseAE621_06865P0AFK4Positive1473104 - 147401533791.2
abc transporter permeaseAE621_06870Not AvailablePositive1474017 - 147490431728.5
gntr family transcriptional regulatorAE621_06875Not AvailablePositive1474918 - 147567927883.6
asp/glu racemaseAE621_06880Not AvailablePositive1475696 - 147643325189.5
endonuclease iiiAE621_06885P44319Negative1476618 - 147725623473.6

Displaying genes 1311 – 1320 of 5725 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

309 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da

Displaying 1–10 of 309 metabolites

Health Effects

No health effects information available for this bacterium.